;; Added by Package.el.  This must come before configurations of
;; installed packages.  Don't delete this line.  If you don't want it,
;; just comment it out by adding a semicolon to the start of the line.
;; You may delete these explanatory comments.
(package-initialize)

;; Use a dark theme now
(load-theme 'wheatgrass)

;; ESS - for working in R
(autoload 'R-mode "ess-site.el" "Major mode for editing R source." t)
(setq load-path (cons "/usr/share/emacs/site-lisp/ess" load-path))
(load "/usr/share/emacs/site-lisp/ess/lisp/ess-site")

;; enable autocomplete
(add-hook 'after-init-hook 'global-company-mode)

(require 'org)

;; Auctex
(load "auctex.el" nil t t)
(load "preview-latex.el" nil t t)

;; org-mode support for R and LaTeX
(org-babel-do-load-languages
 'org-babel-load-languages
 '((R . t)
   (latex . t)))
;; Security risk - This is somewhat ill-advised it appears
(setq org-confirm-babel-evaluate nil)

;; Automatically switch to various modes
(setq auto-mode-alist
    '(("\\.mdwn\\'" . markdown-mode)
      ("\\.md\\'" . markdown-mode)
      ("\\.yarn\\'" . markdown-mode)
      ("\\.js\\'" . js-mode)
      ("\\.json\\'" . js-mode)
      ("Makefile" . makefile-mode)
      ("README" . markdown-mode)
      ("NEWS" . markdown-mode)
      ("COMMIT_EDITMSG\\'" . text-mode)
      ("\\.html\\'" . html-mode)
      ("\\.css\\'" . css-mode)
      ("\\.yaml\\'" . yaml-mode)
      ("\\.yml\\'" . yaml-mode)
      ("\\.ick\\'" . yaml-mode)
      ("\\.py\\'" . python-mode)
      ("\\.R\\'" . R-mode)
      ("\\.org\\'" . org-mode)
      ("\\.sh\\'" . shell-script-mode)))

;; Enable the melpa archive for packages
(require 'package)
(setq package-enable-at-startup nil)
(add-to-list 'package-archives '("melpa" . "https://melpa.org/packages/") t)
(add-to-list 'package-archives '("org" . "http://orgmode.org/elpa/") t)
(add-to-list 'package-archives
             '("elpy" . "http://jorgenschaefer.github.io/packages/"))

(custom-set-variables
 ;; custom-set-variables was added by Custom.
 ;; If you edit it by hand, you could mess it up, so be careful.
 ;; Your init file should contain only one such instance.
 ;; If there is more than one, they won't work right.
 '(browse-url-browser-function 'browse-url-firefox)
 '(org-export-backends '(ascii html icalendar latex md odt))
 '(package-selected-packages
   '(elfeed-protocol ack company magit auctex lsp-mode elpy ## org htmlize leuven-theme lua-mode ess-smart-underscore ess-R-data-view ess)))
(custom-set-faces
 ;; custom-set-faces was added by Custom.
 ;; If you edit it by hand, you could mess it up, so be careful.
 ;; Your init file should contain only one such instance.
 ;; If there is more than one, they won't work right.
 '(default ((t (:family "Source Code Pro" :foundry "ADBO" :slant normal :weight normal :height 143 :width normal)))))


;; Send mail using SMTP via mail.vanrenterghem.io.
(setq send-mail-function    'smtpmail-send-it)
(setq smtpmail-smtp-server "mail.vanrenterghem.io"
      smtpmail-smtp-service 587
      smtpmail-stream-type 'starttls)
(setq user-full-name "Frederik Vanrenterghem"
      smtpmail-local-domain "vanrenterghem.io"
      user-mail-address (concat "frederik@" smtpmail-local-domain))
(setq mail-default-headers
      (concat "X-Mailer: GNU Emacs " (symbol-value 'emacs-version))) 
(setq w3m-pop-up-frames t)

(global-set-key [remap list-buffers] 'ibuffer)

;;; use pass (~/.password-store)
;;; (see The Unix password store)
(auth-source-pass-enable)

;; Elfeed news reader from Nextcloud
(require 'elfeed)
(require 'elfeed-protocol)

(setq elfeed-use-curl nil)
(elfeed-set-timeout 36000)
(setq elfeed-protocol-feeds '(
            ("owncloud+https://frederik@owncloud.vanrenterghem.biz" :use-authinfo t)
        ))
(elfeed-protocol-enable)